Home Fundamentals Research Data Management FAIR Data Principles Metadata Ontologies Data Sharing Data Publications Data Management Plan Version Control & Git Public Data Repositories Persistent Identifiers Electronic Lab Notebooks (ELN) DataPLANT Implementations Annotated Research Context User Journey ARC specification ARC Commander QuickStart QuickStart (Experts) Swate QuickStart Walk-through Best Practices For Data Annotation DataHUB DataPLAN Ontology Service Landscape ARC Commander Manual Setup Git Installation ARC Commander Installation Windows MacOS Linux ARC Commander DataHUB Access Before we start Central Functions Initialize Clone Connect Synchronize Configure Branch ISA Metadata Functions ISA Metadata Investigation Study Assay Update Export ARCitect Manual Installation - Windows Installation - macOS Installation - Linux QuickStart QuickStart - Videos ARCmanager Manual What is the ARCmanager? How to use the ARCmanager Swate Manual QuickStart - Videos Annotation tables Building blocks Building Block Types Adding a Building Block Filling cells with ontology terms Advanced Term Search File Picker Templates Contribute Templates ISA-JSON DataHUB Manual Overview User Settings Generate a Personal Access Token (PAT) Projects Panel ARC Panel Forks Working with files ARC Settings ARC Wiki Groups Panel Create a new user group CQC Pipelines & validation Find and use ARC validation packages Data publications Passing Continuous Quality Control Submitting ARCs with ARChigator Track publication status Use your DOIs Guides ARC User Journey Create your ARC ARC Commander QuickStart ARC Commander QuickStart (Experts) ARCitect QuickStart Annotate Data in your ARC Annotation Principles ISA File Types Best Practices For Data Annotation Swate QuickStart Swate Walk-through Share your ARC Register at the DataHUB DataPLANT account Invite collaborators to your ARC Sharing ARCs via the DataHUB Work with your ARC Using ARCs with Galaxy Computational Workflows CWL Introduction CWL runner installation CWL Examples CWL Metadata Recommended ARC practices Syncing recommendation Keep files from syncing to the DataHUB Working with large data files Adding external data to the ARC ARCs in Enabling Platforms Publication to ARC Troubleshooting Git Troubleshooting Contribute Swate Templates Knowledge Base Teaching Materials Events 2023 Nov: CEPLAS PhD Module Oct: CSCS CEPLAS Start Your ARC Sept: MibiNet CEPLAS Start Your ARC July: RPTU Summer School on RDM July: Data Steward Circle May: CEPLAS Start Your ARC Series Start Your ARC Series - Videos Events 2024 TRR175 Becoming FAIR CEPLAS ARC Trainings – Spring 2024 MibiNet CEPLAS DataPLANT Tool-Workshops TRR175 Tutzing Retreat Frequently Asked Questions

CEPLAS ARC Trainings – Spring 2024

last updated at 2024-03-06 About

This workshop demonstrates the ARC concept and introduces the DataPLANT tools and services ARCitect, SWATE and DataHUB. In the hands-on sessions (full-day workshop only) you learn how to build a first ARC for your own research project and annotate the data in your ARC.

Organizers Registration

➡️ Please register latest two weeks before the workshop date.
💡 Maximum 12 participants per session.

Full-day

Half-day

Goals
  • First few steps into the ARC ecosystem
  • Move existing datasets into ARCs
  • Share them via the DataHUB
  • Annotate them with metadata
Dates and Locations
Date Type Time Location Room
03.04.2024 (Wed) Full-day 09:00 - 17:00 HHU ZSL 22.07, Room U1.21
04.04.2024 (Thu) Full-day 09:00 - 17:00 HHU ZSL 22.07, Room U1.21
11.04.2024 (Thu) ⭐ Half-day 09:00 - 13:00 HHU 26.24.U1.018
18.04.2024 (Thu) ⭐ Full-day 09:00 - 17:00 HHU 28.01.00.011
25.04.2024 (Thu) Full-day 09:00 - 17:00 UoC Biozentrum, Bldg 304, Room 1.007
26.04.2024 (Fri) Half-day 09:00 - 12:00 UoC Biozentrum, Bldg 304, Room 1.007
30.04.2024 (Tue) ⭐ Full-day 09:00 - 17:00 HHU 22.07.U1.025
23.05.2024 (Thu) Full-day 09:00 - 17:00 HHU ZSL 22.07, Room U1.25
24.05.2024 (Fri) Half-day 09:00 - 12:00 HHU ZSL 22.07, Room U1.21

⭐ Workshop with MibiNet. See details and registration here

Tentative agenda

We will mostly introduce concepts and tools in the mornings (half-day and full-day). The afternoons (full-day only) focus on interactive parts. Here you have the chance to use the tools with your own data while we are there to help.

Half-day
Time Topics
09:00 - 09:15 Welcome, Intro RDM and NFDI
09:15 - 09:30 Overview DataPLANT, and DataPLANT Tool chain
09:30 - 10:15 Demo ARCitect and DataHUB
10:15 - 10:30 Short break
10:30 - 11:45 Demo Metadata annotation with SWATE
11:45 - 12:00 Q & A
Full-day (continues half-day)
Time Topics
12:00 - 13:00 Lunch break
13:00 - 15:00 Hands-on ARCitect, DataHUB and Swate
15:00 - 15:15 Short break
15:15 - 16:30 Create your own ARC
16:30 - 17:00 Q & A and wrap-up
Checklist for participants (full-day)

Please prepare the following before the workshop.

💡 Not all installations are perfectly straight-forward. We will be available half an hour before the workshops to help you get your machine up and running.

Continuous support

Data managers in Düsseldorf, Cologne, Jülich and close by (CEPLAS, MibiNet, TRR341) offer ad hoc support, see details here.

Contribution Guide 📖
✏️ Edit this page