Home
Fundamentals
Research Data Management
FAIR Data Principles
Metadata
Ontologies
Data Sharing
Data Publications
Data Management Plan
Version Control & Git
Public Data Repositories
Persistent Identifiers
Electronic Lab Notebooks (ELN)
DataPLANT Implementations
Annotated Research Context
User Journey
ARC specification
ARC Commander
QuickStart
QuickStart (Experts)
Swate
QuickStart
Walk-through
Best Practices For Data Annotation
DataHUB
DataPLAN
Ontology Service Landscape
ARC Commander Manual
Setup
Git Installation
ARC Commander Installation
Windows
MacOS
Linux
ARC Commander DataHUB Access
Before we start
Central Functions
Initialize
Clone
Connect
Synchronize
Configure
Branch
ISA Metadata Functions
ISA Metadata
Investigation
Study
Assay
Update
Export
ARCitect Manual
Installation - Windows
Installation - macOS
Installation - Linux
QuickStart
Swate Manual
Swate Installation
Excel Browser
Excel Desktop
Windows – installer
Windows – manually
macOS – manually
Organization-wide
Core Features
Annotation tables
Building blocks
Building Block Types
Adding a Building Block
Using Units with Building Blocks
Filling cells with ontology terms
Advanced Term Search
Templates
File Picker
Expert Features
Contribute Templates
ISA-JSON
DataHUB Manual
Overview
User Settings
Generate a Personal Access Token (PAT)
Projects Panel
ARC Panel
Forks
Working with files
ARC Settings
ARC Wiki
Groups Panel
Create a new user group
Data publications
Passing Continuous Quality Control
Submitting ARCs with ARChigator
Track publication status
Use your DOIs
Guides
ARC User Journey
Create your ARC
ARC Commander QuickStart
ARC Commander QuickStart (Experts)
ARCitect QuickStart
Annotate Data in your ARC
Annotation Principles
ISA File Types
Best Practices For Data Annotation
Swate QuickStart
Swate Walk-through
Share your ARC
Register at the DataHUB
Invite collaborators to your ARC
Recommended ARC practices
Syncing recommendation
Keep files from syncing to the DataHUB
Working with large data files
Adding external data to the ARC
ARCs in Enabling Platforms
Publication to ARC
Contribute
Swate Templates
Knowledge Base
Teaching Materials
Slides
DataPLANT
Annotated Research Context
Videos
Start Your ARC Series
Events 2023
Nov: CEPLAS PhD Module
Oct: CSCS CEPLAS Start Your ARC
Sept: MibiNet CEPLAS Start Your ARC
July: RPTU Summer School on RDM
July: Data Steward Circle
May: CEPLAS Start Your ARC Series
Frequently Asked Questions
last updated at 2022-12-13
Welcome to the ARC Commander Manual.
Please explore the sections on the left to find guides on
- Setup and Installation to use the ARC Commander,
- Central Functions to work with your ARC, and
- Functions to fill and work on ISA Metadata within your ARC.
Developers, please check out the ARC Commander Dev Docs.