Fundamentals
Research Data Management
FAIR Data Principles
Metadata
Ontologies
Data Sharing
Data Publications
Data Management Plan
Version Control & Git
Public Data Repositories
Persistent Identifiers
Implementation within DataPLANT
Annotated Research Context
User Journey
ARC Commander
QuickStart
QuickStart (experts)
Swate
QuickStart
Walk-through
Best Practices For Data Annotation
DataHUB
DataPLAN
ARC Commander Manual
Setup
Installing Dependencies
Configure Git
Installing the ARC Commander
Windows
MacOS
Linux
DataHUB Access
Before we start
Central Functions
Initialize
Clone
Connect
Synchronize
Configure
Branch
ISA Metadata Functions
ISA Metadata
Investigation
Study
Assay
Update
Export
Swate Manual
Setup
Installing Swate
Browser
Desktop, via installer (beta-stage)
Desktop, manually (recommended)
MacOS
Organization-wide
Core Features
Annotation tables
Building blocks
Building Block Types
Adding a Building Block
Using Units with Building Blocks
Filling cells with ontology terms
Advanced Term Search
Templates
Contribute Templates
File Picker
Expert Features
ISA-JSON
Frequently Asked Questions
Teaching Materials
DataPLANT Overview
Big Picture
ARC structure
ARC Demo
last updated at 2023-04-06
After the setup steps, you're all set and ready to start using the Arc Commander.
- For all following steps it is assumed, that you opened a shell or command prompt within a directory you want to initiate as an ARC
- Note that each input that contains non-literal characters must be encapsulated in quotation marks when entered within the shell. This also applies when using the editor for numerals that are no numbers (dates, phone numbers, etc.).
- Furthermore,
arc
defines the path to the ArcCommander executable (e.g. on Windows "C:\Users\userA\programs\ArcCommander\arc.exe").
- Every input can be entered by using the shell. For user friendly experience, an editor may pop up if no arguments are given. After entering the required values, save and close the editor.
⚠️ Note: We strongly recommend to read the in-depth guides to the ARC Commander on the following pages!
DataPLANT Support
Besides these technical solutions, DataPLANT supports you with community-engaged data stewardship. For further assistance, feel free to reach out via our
helpdesk
or by contacting us
directly
.